Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| CESC | rs11652289 | chr17:29012932 | A/G | 0 | 220 | 14.1 | 10.2 | 1.23 | KM Plot |
| CESC | rs11655003 | chr17:29004134 | G/A | 0 | 219 | 14.7 | 9.83 | 1.23 | KM Plot |
| CESC | rs11655035 | chr17:29004218 | G/A | 0 | 219 | 14.7 | 9.83 | 1.23 | KM Plot |
| CESC | rs11657662 | chr17:29076347 | A/G | 0 | 224 | 1.23 | 13.67 | 14.1 | KM Plot |
| CESC | rs11859266 | chr16:1863981 | C/G | 4.8E-5 | 223 | 13.8 | 15.03 | 6.02 | KM Plot |
| CESC | rs11860201 | chr16:1864365 | C/T | 4.8E-5 | 223 | 13.8 | 15.03 | 6.02 | KM Plot |
| CESC | rs11860469 | chr16:1867040 | T/C | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs11863390 | chr16:1867014 | G/C | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs11864471 | chr16:1864251 | A/G | 4.8E-5 | 223 | 13.8 | 15.03 | 6.02 | KM Plot |
| CESC | rs11865665 | chr16:1865536 | A/G | 4.8E-5 | 223 | 13.8 | 15.03 | 6.02 | KM Plot |
| CESC | rs11949767 | chr5:176740244 | A/G | 2.28E-5 | 224 | 5.7 | 12.53 | 18.27 | KM Plot |
| CESC | rs12120162 | chr1:15516387 | C/T | 9.87E-5 | 220 | 14.27 | 14.08 | 5.83 | KM Plot |
| CESC | rs12123609 | chr1:40303627 | C/T | 2.83E-5 | 224 | 14.18 | 9.8 | 8.4 | KM Plot |
| CESC | rs12125901 | chr1:40321194 | T/C | 3.48E-5 | 224 | 14.27 | 9.47 | 8.4 | KM Plot |
| CESC | rs12129755 | chr1:40375048 | C/T | 1.87E-6 | 218 | 13.8 | 20.52 | 8.4 | KM Plot |